When I use "Restore Windows Positions From Last Save" sometimes it doesn't work for some windows. It happens to me specially with Autodesk 3ds Max and Chrome, but the weird thing is that it happens often, but not consistently always.

Sure, there you go.

I executed a 'Save Window Positions and start screensaver(blank)' command


when my desktop looked like this:


Some time after when I came back these two windows are in the other display, and executing a 'Restore Window postions from last save' does absolutely nothing on them:

And again, all these 3ds Max and VRay windows are totally ignored by the command:

Sure, there they go.